Board Thread:Questions and Answers/@comment-184.58.106.97-20130122182035/@comment-50.125.29.23-20130227065624

Supplying the induction furnace (or ANY other solid block) with a direct redstone current will make it supply the current to any adjacent blocks, such as filters, transposers, or any other machines (as per redstone and red alloy mechanics). As such, putting wires on the machines and applying redstone current will, expectedly, put all of the filters/transposers attached to the machine in a constant "on" state, meaning they will not respond to any pulses from elsewhere.

To remedy this, follow redstone rules and apply redstone current to a block next to the furnace (for instance, a dirt block) that is not next to the RP2 machine. This will keep the furnace on whilst maintaining the functionality of your pulsing system. This is not a malfunction, it is the game mechanic.